Publications

Peer-reviewed Publications

2024

  • Fan K., Ali M., He K., Feng Y., Yu T., Zhang H., Ai T., Zeng W., Fu J, Zhou Y., Heng Y., Gu F., Wang J., Huang C., Li L., and Li H. Genomic analysis of modern maize inbred lines reveals diversity and selective breeding effects Science China Life Sciences. DOI: 10.1007/s11427-024-2725-1
  • Khokhar E.S., Lozada D.N., Ali M., Khan M.I., Nourbakhsh S.S., and Walker S. Marker-trait association analysis for easy fruit destemming and mechanical harvestability traits in New Mexican chile pepper (Capsicum annuum L.). Frontiers in Horticulture. DOI: 10.3389/fhort.2024.1448159
  • Li H., Li X., Zhang P., Feng Y., Mi J., Gao S., Sheng L., Ali M., Yang Z., Li L., Fang W., Wang W., Qian Q., Gu F., and Zhou W. Smart Breeding Platform: a web-based tool for high-throughput population genetics, phenomics, and genomic selection. Molecular Plant. DOI: 10.1016/j.molp.2024.03.002

2023

  • Maqbool S., Saeed F., Maqbool A., Khan M.I., Ali M., Rasheed A., Xia X., and He Z. Genome-wide association study for phosphate-responsive root hair length and density in bread wheat. Current Plant Biology, 2214-6628. DOI: 10.1016/j.cpb.2023.100290

2022

  • Khan M.I., Kainat Z., Maqbool S., Mehwish A., Ahmad S., Suleman H.M., Mahmood Z., Ali M., Aziz A., Rasheed A., and Li H. Genome-wide association for heat tolerance at seedling stage in historical spring wheat cultivars. Frontiers in Plant Science, 13. DOI: 10.3389/fpls.2022.972481
  • Morgounov A., Li H., Shepelev S., Ali M., Flis P., Koksel H., Savin T., and Shamanin V. Genetic characterization of spring wheat germplasm for macro-microelements and trace metals. Plants, 11(16), 2173. DOI: 10.3390/plants11162173
  • Shanshan D., Ali M., Shahid M., Arif A., Waheed M.Q., Xia X., Trethowan R., Tester M., Poland J., Ogbonnaya F.C., Rasheed A., He Z., and Li H. Genetic networks underlying salinity tolerance in wheat by genome-wide association analysis. Theoretical and Applied Genetics, 1-17. DOI: 10.1007/s00122-022-04153-5 (Equally contributed)
  • Ali M., Shanshan D., Wang J., Sadiq H., Rasheed A., He Z., and Li H. Genetic diversity and selection signatures in synthetic-derived wheats and modern spring wheats. Frontiers in Plant Science, 13:877496. DOI: 10.3389/fpls.2022.877496
  • Uzair M., Ali M., Fiaz S., Attia K., Khan N., Al-Doss A., Khan M.R., and Ali Z. The characterization of wheat genotypes for salinity tolerance using morphophysiological indices under hydroponic conditions. Saudi Journal of Biological Sciences, 29(6), 103299. DOI: 10.1016/j.sjbs.2022.103299
  • Mahmood Z., Ali M., Mirza J.I., Fayyaz M., Majeed K., Kashif M., Trethowan R., Ogbinnaya F.C., Poland J., Quraishi U.M., Hickey L., Rasheed A., and He Z. Genome-wide association and genomic prediction for stripe rust resistance in synthetic-derived wheats. Frontiers in Plant Science, 66. DOI: 10.3389/fpls.2022.788593

2021

  • Shoukat M., Sun M., Ali M., Mahmood T., Naseer S., Maqbool S., Rehman S., Mahmood Z., Xia X., Hao Y., Rasheed A., and He Z. Genetic gain for grain micronutrients and their association with phenology in historical wheat cultivars of Pakistan released between 1909 and 2018. Agronomy, 1247. DOI: 10.3390/agronomy11061247

2020

  • Mahmood Z., Aziz A., Andleeb T., Tanveer S.K., Waqar S., Qamar M., Abbass S.H., Rafique T., Ali M., Hasan S.W., and Quraishi U.M. Screening of resynthesized hexaploid wheats for durable rust resistance. International Journal of Agriculture and Biology, 24(3), 621-630. DOI: 10.17957/IJAB/15.1462
  • Ali M., Zhang L., Delacy I., Arief V., Dieters M., Pfeiffer W.H., Wang J., and Li H. Modeling and simulation of recurrent phenotypic and genomic selections in plant breeding under the presence of epistasis. The Crop Journal. DOI: 10.1016/j.cj.2020.02.002
  • Ali M., Zhang Y., Rasheed A., Wang J., and Zhang L. Genomic prediction for grain yield and yield-related traits in Chinese winter wheat. International Journal of Molecular Sciences, 21, 1342. DOI: 10.3390/ijms21041342
  • Rasheed A., Takumi S., Hassan M.A., Imtiaz M., Ali M., Morgunov A.I., Mahmood T., and He Z. Appraisal of wheat genomics for gene discovery and breeding applications: a special emphasis on advances in Asia. Theoretical and Applied Genetics, 1-18. DOI: 10.1007/s00122-019-03523-w

2018

  • Khalid M., Gul A., Amir R., Ali M., Afzal F., Quraishi U.M., Ahmad Z., and Rasheed A. QTL mapping for seedling morphology under drought stress in wheat cross synthetic (W7984)/Opata. Plant Genetic Resources, 16, 359-366. DOI: 10.1017/S1479262118000023

Pre-prints

  • Shoukat M., Sun M., Ali M., Mahmood T., Naseer S., Maqbool S., Rehman S., Mahmood Z., Xia X., Hao Y., Rasheed A., and He Z. (2021). Genetic gain for grain micronutrients and their association with phenology in historical wheat cultivars of Pakistan released between 1909 and 2018. Agronomy. Pre-print: 10.20944/preprints202105.0283.v1